Detailed information of SNP:
|
SNP ID:
sf0609861614(Gbrowse)
Chromosome: chr06 Position: 9861614 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.36% | 11.64% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609861614 | C->T | LOC_Os06g17000(LOC_Os06g17000.1) | Synonymous |