Detailed information of SNP:
|
SNP ID:
sf0609863338(Gbrowse)
Chromosome: chr06 Position: 9863338 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 72.19% | 27.81% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 51.11% | 48.89% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609863338 | A->C | INTERGENIC | None |