Detailed information of SNP:
|
SNP ID:
sf0609866320(Gbrowse)
Chromosome: chr06 Position: 9866320 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.31% | 37.69% |
| All Indica | 797 | 76.79% | 23.21% |
| All Japonica | 497 | 50.30% | 49.70% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 209 | 57.42% | 42.58% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609866320 | A->G | INTERGENIC | None |