Detailed information of SNP:
|
SNP ID:
sf0609872888(Gbrowse)
Chromosome: chr06 Position: 9872888 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.57% | 31.43% |
| All Indica | 796 | 68.84% | 31.16% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 73.46% | 26.54% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609872888 | A->C | INTERGENIC | None |