Detailed information of SNP:
|
SNP ID:
sf0609887983(Gbrowse)
Chromosome: chr06 Position: 9887983 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.39% | 24.61% |
| All Indica | 798 | 67.79% | 32.21% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609887983 | C->T | INTERGENIC | None |