Detailed information of SNP:
|
SNP ID:
sf0609888579(Gbrowse)
Chromosome: chr06 Position: 9888579 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 91.04% | 8.96% |
| All Indica | 794 | 89.80% | 10.20% |
| All Japonica | 491 | 91.65% | 8.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 83.38% | 16.62% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 90 | 72.22% | 27.78% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609888579 | C->T | LOC_Os06g17050(LOC_Os06g17050.1) | Synonymous |