Detailed information of SNP:
|
SNP ID:
sf0609888744(Gbrowse)
Chromosome: chr06 Position: 9888744 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 80.96% | 19.04% |
| All Indica | 794 | 76.70% | 23.30% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 76.61% | 23.39% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609888744 | C->T | INTERGENIC | None |