Detailed information of SNP:
|
SNP ID:
sf0609890804(Gbrowse)
Chromosome: chr06 Position: 9890804 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 83.64% | 16.36% |
| All Indica | 782 | 81.20% | 18.80% |
| All Japonica | 495 | 85.25% | 14.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 80.94% | 19.06% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 63.29% | 36.71% |
| Temperate Japonica | 334 | 90.42% | 9.58% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609890804 | G->A | LOC_Os06g17060(LOC_Os06g17060.1) | Synonymous |