Detailed information of SNP:
|
SNP ID:
sf0609890924(Gbrowse)
Chromosome: chr06 Position: 9890924 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 66.28% | 33.72% |
| All Indica | 773 | 41.40% | 58.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 35.96% | 64.04% |
| Indica II | 211 | 34.12% | 65.88% |
| Indica Intermediate | 206 | 58.25% | 41.75% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609890924 | G->A | LOC_Os06g17060(LOC_Os06g17060.1) | Synonymous |