Detailed information of SNP:
|
SNP ID:
sf0609893688(Gbrowse)
Chromosome: chr06 Position: 9893688 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.16% | 17.84% |
| All Indica | 798 | 78.45% | 21.55% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609893688 | G->T | LOC_Os06g17070(LOC_Os06g17070.1) | Non-Synonymous SNP |