Detailed information of SNP:
|
SNP ID:
sf0609901441(Gbrowse)
Chromosome: chr06 Position: 9901441 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 58.17% | 41.83% |
| All Indica | 794 | 69.14% | 30.86% |
| All Japonica | 496 | 39.11% | 60.89% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 374 | 70.32% | 29.68% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 209 | 47.37% | 52.63% |
| Temperate Japonica | 334 | 31.14% | 68.86% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609901441 | G->A | INTERGENIC | None |