Detailed information of SNP:
|
SNP ID:
sf0609901527(Gbrowse)
Chromosome: chr06 Position: 9901527 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 83.10% | 16.90% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 494 | 59.72% | 40.28% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 332 | 44.88% | 55.12% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609901527 | G->A | INTERGENIC | None |