Detailed information of SNP:
|
SNP ID:
sf0609902453(Gbrowse)
Chromosome: chr06 Position: 9902453 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 53.69% | 46.31% |
| All Indica | 797 | 62.99% | 37.01% |
| All Japonica | 494 | 41.30% | 58.70% |
| Aus | 62 | 40.32% | 59.68% |
| Indica I | 373 | 69.97% | 30.03% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 40.60% | 59.40% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609902453 | G->A | INTERGENIC | None |