Detailed information of SNP:
|
SNP ID:
sf0609902616(Gbrowse)
Chromosome: chr06 Position: 9902616 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 79.76% | 20.24% |
| All Indica | 797 | 88.08% | 11.92% |
| All Japonica | 491 | 67.62% | 32.38% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 333 | 59.16% | 40.84% |
| Tropical Japonica | 90 | 88.89% | 11.11% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609902616 | T->C | INTERGENIC | None |