Detailed information of SNP:
|
SNP ID:
sf0609911064(Gbrowse)
Chromosome: chr06 Position: 9911064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.36% | 10.64% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609911064 | G->A | LOC_Os06g17100(LOC_Os06g17100.1) | Non-Synonymous SNP |