Detailed information of SNP:
|
SNP ID:
sf0609918358(Gbrowse)
Chromosome: chr06 Position: 9918358 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 76.38% | 23.62% |
| All Indica | 799 | 66.21% | 33.79% |
| All Japonica | 496 | 89.52% | 10.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609918358 | A->G | INTERGENIC | None |