Detailed information of SNP:
|
SNP ID:
sf0609919143(Gbrowse)
Chromosome: chr06 Position: 9919143 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.59% | 23.41% |
| All Indica | 798 | 66.29% | 33.71% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609919143 | G->A | INTERGENIC | None |