Detailed information of SNP:
|
SNP ID:
sf0609925309(Gbrowse)
Chromosome: chr06 Position: 9925309 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1322 | 74.89% | 25.11% |
| All Indica | 797 | 83.56% | 16.44% |
| All Japonica | 414 | 54.59% | 45.41% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 265 | 47.17% | 52.83% |
| Tropical Japonica | 86 | 62.79% | 37.21% |
| Japonica Intermediate | 63 | 74.60% | 25.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609925309 | C->T | INTERGENIC | None |