Detailed information of SNP:
|
SNP ID:
sf0609937605(Gbrowse)
Chromosome: chr06 Position: 9937605 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.39% | 13.61% |
| All Indica | 798 | 83.83% | 16.17% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609937605 | G->A | LOC_Os06g17140(LOC_Os06g17140.1) | SNPs that introduce stop codons |