Detailed information of SNP:
|
SNP ID:
sf0609974419(Gbrowse)
Chromosome: chr06 Position: 9974419 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 76.87% | 23.13% |
| All Indica | 787 | 68.23% | 31.77% |
| All Japonica | 496 | 89.52% | 10.48% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 74.73% | 25.27% |
| Indica II | 208 | 72.12% | 27.88% |
| Indica Intermediate | 207 | 52.66% | 47.34% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609974419 | A->G | LOC_Os06g17220(LOC_Os06g17220.1) | Non-Synonymous SNP |