Detailed information of SNP:
|
SNP ID:
sf0609975965(Gbrowse)
Chromosome: chr06 Position: 9975965 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 72.21% | 27.79% |
| All Indica | 798 | 75.69% | 24.31% |
| All Japonica | 497 | 64.79% | 35.21% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609975965 | T->C | INTERGENIC | None |