Detailed information of SNP:
|
SNP ID:
sf0609977812(Gbrowse)
Chromosome: chr06 Position: 9977812 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 82.56% | 17.44% |
| All Indica | 797 | 76.66% | 23.34% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609977812 | G->A | LOC_Os06g17230(LOC_Os06g17230.1) | INTRON |