Detailed information of SNP:
|
SNP ID:
sf0609977937(Gbrowse)
Chromosome: chr06 Position: 9977937 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.88% | 8.12% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609977937 | C->T | LOC_Os06g17230(LOC_Os06g17230.1) | INTRON |