Detailed information of SNP:
|
SNP ID:
sf0609992622(Gbrowse)
Chromosome: chr06 Position: 9992622 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.04% | 10.96% |
| All Indica | 795 | 87.55% | 12.45% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 81.45% | 18.55% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609992622 | G->A | INTERGENIC | None |