Detailed information of SNP:
|
SNP ID:
sf0609999287(Gbrowse)
Chromosome: chr06 Position: 9999287 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 76.85% | 23.15% |
| All Indica | 797 | 67.00% | 33.00% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 73.53% | 26.47% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609999287 | T->C | INTERGENIC | None |