Detailed information of SNP:
|
SNP ID:
sf0610001231(Gbrowse)
Chromosome: chr06 Position: 10001231 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 73.12% | 26.88% |
| All Indica | 796 | 66.83% | 33.17% |
| All Japonica | 495 | 79.39% | 20.61% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 212 | 68.40% | 31.60% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 334 | 82.63% | 17.37% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610001231 | T->C | INTERGENIC | None |