Detailed information of SNP:
|
SNP ID:
sf0610001565(Gbrowse)
Chromosome: chr06 Position: 10001565 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 91.16% | 8.84% |
| All Indica | 795 | 91.19% | 8.81% |
| All Japonica | 496 | 90.12% | 9.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610001565 | G->A | INTERGENIC | None |