Detailed information of SNP:
|
SNP ID:
sf0610012203(Gbrowse)
Chromosome: chr06 Position: 10012203 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.40% | 34.60% |
| All Indica | 799 | 64.08% | 35.92% |
| All Japonica | 497 | 62.37% | 37.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 71.73% | 28.27% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 59.40% | 40.60% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610012203 | T->C | LOC_Os06g17285(LOC_Os06g17285.1) | Synonymous |
| sf0610012203 | T->C | LOC_Os06g17285(LOC_Os06g17285.2) | Synonymous |