Detailed information of SNP:
|
SNP ID:
sf0610013318(Gbrowse)
Chromosome: chr06 Position: 10013318 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.36% | 15.64% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 73.44% | 26.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610013318 | A->G | LOC_Os06g17290(LOC_Os06g17290.1) | Synonymous |