Detailed information of SNP:
|
SNP ID:
sf0610019254(Gbrowse)
Chromosome: chr06 Position: 10019254 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.84% | 26.16% |
| All Indica | 798 | 63.91% | 36.09% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 72.46% | 27.54% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610019254 | C->T | INTERGENIC | None |