Detailed information of SNP:
|
SNP ID:
sf0610019709(Gbrowse)
Chromosome: chr06 Position: 10019709 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 37.17% | 62.83% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 28.80% | 71.20% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 48.66% | 51.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610019709 | C->T | INTERGENIC | None |