Detailed information of SNP:
|
SNP ID:
sf0610020420(Gbrowse)
Chromosome: chr06 Position: 10020420 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.02% | 48.98% |
| All Indica | 799 | 37.30% | 62.70% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 29.07% | 70.93% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 48.36% | 51.64% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610020420 | G->A | INTERGENIC | None |