Detailed information of SNP:
|
SNP ID:
sf0610020531(Gbrowse)
Chromosome: chr06 Position: 10020531 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.34% | 48.66% |
| All Indica | 799 | 37.67% | 62.33% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 29.60% | 70.40% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 48.66% | 51.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610020531 | A->G | INTERGENIC | None |