Detailed information of SNP:
|
SNP ID:
sf0610025312(Gbrowse)
Chromosome: chr06 Position: 10025312 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 69.38% | 30.62% |
| All Indica | 792 | 62.25% | 37.75% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 371 | 72.24% | 27.76% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610025312 | T->C | INTERGENIC | None |