Detailed information of SNP:
|
SNP ID:
sf0610025653(Gbrowse)
Chromosome: chr06 Position: 10025653 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.27% | 36.73% |
| All Indica | 793 | 36.57% | 63.43% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 25.81% | 74.19% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610025653 | G->A | INTERGENIC | None |