Detailed information of SNP:
|
SNP ID:
sf0610026828(Gbrowse)
Chromosome: chr06 Position: 10026828 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.77% | 21.23% |
| All Indica | 798 | 73.43% | 26.57% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610026828 | G->A | INTERGENIC | None |