Detailed information of SNP:
|
SNP ID:
sf0610035950(Gbrowse)
Chromosome: chr06 Position: 10035950 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.73% | 45.27% |
| All Indica | 797 | 85.07% | 14.93% |
| All Japonica | 496 | 12.10% | 87.90% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610035950 | A->G | INTERGENIC | None |