Detailed information of SNP:
|
SNP ID:
sf0610055325(Gbrowse)
Chromosome: chr06 Position: 10055325 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 69.74% | 30.26% |
| All Indica | 791 | 47.91% | 52.09% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 39.73% | 60.27% |
| Indica II | 211 | 45.02% | 54.98% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610055325 | G->T | LOC_Os06g17350(LOC_Os06g17350.1) | Non-Synonymous SNP |