Detailed information of SNP:
|
SNP ID:
sf0610057799(Gbrowse)
Chromosome: chr06 Position: 10057799 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.06% | 40.94% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610057799 | C->T | LOC_Os06g17350(LOC_Os06g17350.1) | Synonymous |