Detailed information of SNP:
|
SNP ID:
sf0610058823(Gbrowse)
Chromosome: chr06 Position: 10058823 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 90.49% | 9.51% |
| All Indica | 785 | 89.81% | 10.19% |
| All Japonica | 494 | 90.28% | 9.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 91.23% | 8.77% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610058823 | A->C | LOC_Os06g17350(LOC_Os06g17350.1) | Synonymous |