Detailed information of SNP:
|
SNP ID:
sf0610059452(Gbrowse)
Chromosome: chr06 Position: 10059452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 80.29% | 19.71% |
| All Indica | 778 | 72.88% | 27.12% |
| All Japonica | 490 | 90.00% | 10.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 81.22% | 18.78% |
| Indica II | 210 | 76.19% | 23.81% |
| Indica Intermediate | 206 | 54.85% | 45.15% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 63.04% | 36.96% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610059452 | C->T | LOC_Os06g17350(LOC_Os06g17350.1) | Synonymous |