Detailed information of SNP:
|
SNP ID:
sf0610059877(Gbrowse)
Chromosome: chr06 Position: 10059877 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 77.75% | 22.25% |
| All Indica | 757 | 60.50% | 39.50% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 57.88% | 42.12% |
| Indica II | 202 | 54.95% | 45.05% |
| Indica Intermediate | 206 | 70.39% | 29.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610059877 | C->A | INTERGENIC | None |