Detailed information of SNP:
|
SNP ID:
sf0610060411(Gbrowse)
Chromosome: chr06 Position: 10060411 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1262 | 89.46% | 10.54% |
| All Indica | 647 | 79.91% | 20.09% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 281 | 65.48% | 34.52% |
| Indica II | 180 | 93.33% | 6.67% |
| Indica Intermediate | 186 | 88.71% | 11.29% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610060411 | C->T | INTERGENIC | None |