Detailed information of SNP:
|
SNP ID:
sf0610065553(Gbrowse)
Chromosome: chr06 Position: 10065553 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 81.59% | 18.41% |
| All Indica | 768 | 74.61% | 25.39% |
| All Japonica | 494 | 89.88% | 10.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 83.71% | 16.29% |
| Indica II | 209 | 76.56% | 23.44% |
| Indica Intermediate | 203 | 56.65% | 43.35% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 91 | 64.84% | 35.16% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610065553 | G->A | LOC_Os06g17370(LOC_Os06g17370.1) | Synonymous |