Detailed information of SNP:
|
SNP ID:
sf0610068456(Gbrowse)
Chromosome: chr06 Position: 10068456 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.71% | 15.29% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 53.43% | 46.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610068456 | A->G | LOC_Os06g17370(LOC_Os06g17370.1) | INTRON |