Detailed information of SNP:
|
SNP ID:
sf0610069965(Gbrowse)
Chromosome: chr06 Position: 10069965 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 76.22% | 23.78% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 489 | 48.47% | 51.53% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 53.19% | 46.81% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610069965 | C->T | INTERGENIC | None |