Detailed information of SNP:
|
SNP ID:
sf0610070157(Gbrowse)
Chromosome: chr06 Position: 10070157 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 69.66% | 30.34% |
| All Indica | 776 | 48.07% | 51.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 363 | 42.15% | 57.85% |
| Indica II | 206 | 41.26% | 58.74% |
| Indica Intermediate | 207 | 65.22% | 34.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610070157 | C->T | INTERGENIC | None |