Detailed information of SNP:
|
SNP ID:
sf0610070264(Gbrowse)
Chromosome: chr06 Position: 10070264 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 66.40% | 33.60% |
| All Indica | 790 | 92.15% | 7.85% |
| All Japonica | 459 | 31.37% | 68.63% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 298 | 30.20% | 69.80% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610070264 | A->T | INTERGENIC | None |