Detailed information of SNP:
|
SNP ID:
sf0610070647(Gbrowse)
Chromosome: chr06 Position: 10070647 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 86.57% | 13.43% |
| All Indica | 678 | 74.78% | 25.22% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 309 | 56.63% | 43.37% |
| Indica II | 177 | 94.35% | 5.65% |
| Indica Intermediate | 192 | 85.94% | 14.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610070647 | C->A | INTERGENIC | None |