Detailed information of SNP:
|
SNP ID:
sf0610071197(Gbrowse)
Chromosome: chr06 Position: 10071197 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.07% | 13.93% |
| All Indica | 795 | 83.27% | 16.73% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 81.82% | 18.18% |
| Indica II | 211 | 77.73% | 22.27% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610071197 | G->A | INTERGENIC | None |